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2013-06-28

Sea lampreys turning up the heat

Research by a team of Michigan State University scientists found that the males have a secondary sex characteristic that creates heat when they get near a female lamprey, something the females find hard to say no to.

The work of the team focused on a small bump located near the male's anterior dorsal fin. Close examination of this bump determined that it was full of fat cells, cells that are similar to ones found in mammals, animals that need to maintain their own body temperature.

By putting a probe into the bump, the researchers found that the temperature of the bump, also known as rope tissue, increased by 0.3 degrees Celsius when the male approached a female, sometimes even more, depending upon the female.

The role this "bump" played in spawning was not known until now. Scientists had thought it merely as ornamental or playing some other minor role.

"We thought it was just a structure that was used for some kind of mechanical stimulation that they needed to trigger the female to lay eggs," said Weiming Li, a professor of fisheries and wildlife and a team member.

Until now it was believed that males attracted females by releasing pheromones.

By attempting to better understand the reproductive biology of the sea lamprey, the researchers hope to find ways to reduce its numbers or eliminate it from the Great Lakes.

Sea lampreys are a very destructive invasive species. Resembling 18-inch eels, they can live in both salt and fresh water and likely found their way into the Great Lakes via shipping channels. They have no natural predators in the Great Lakes.

Parasitic lampreys attach themselves to other fish, such as salmon, trout and whitefish, and suck out the fish's body fluids. The lamprey's sucking disk and sharp teeth scar the host fish, killing many of them. Under some conditions, only one of seven fish attacked by a sea lamprey will survive.

A sea lamprey can kill 40 or more pounds of fish, and they've caused the extinction of three species of whitefish in the Great Lakes. The U.S. and Canadian governments together spend about $10 million to $15 million per year on lamprey control.

Also contributing to the work were the laboratories of Jongeun Choi, associate professor in the Department of Mechanical Engineering, and Titus Brown, assistant professor in the Departments of Computer Science and Engineering and Microbiology and Molecular Genetics.

This latest research is published in the Journal of Experimental Biology.

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What makes a video go viral? More than just good content

June 27, 2013 — If you want your homegrown video to go viral, you'd better have more than just good content. Find someone to endorse it, the more well known the better, according to research at Kansas State University.

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"The content has to make people stay and want to watch it and pass it on to others," said Lindsey Elliott, a May 2013 master's graduate in journalism and mass communications. "But with billions of videos on YouTube, people won't see it if they don't know it's out there."

Elliott studied what makes a nonprofessional video go viral by looking at "I'm Farming and I Grow It," a musical parody of LMFAO's "I'm Sexy and I Know It." The video was created by Greg Peterson, a May 2013 Kansas State University graduate, and his younger siblings, of Assaria. The video touts the importance of farming. The family has followed up on its video success, most recently with its third video parody, "A Fresh Breath of Farm Air," a "Fresh Prince" parody.

Elliott did her research under Louise Benjamin, professor of journalism and mass communications. Elliott's model for a nonprofessional video to go viral shows it takes both content and the recommendation of an opinion leader. For "I'm Farming and I Grow It" it took Sen. Pat Roberts of Kansas praising the video on his Facebook page. Posted June 25, 2012, the video has more than 8.5 million views on YouTube.

"A lot of people said they saw it mentioned on FOX News or 'Good Morning America,' but media wouldn't have gotten a hold of it if there weren't a lot of views to begin with," Elliott said.

Who the opinion leader is -- for instance a 77-year-old senator -- shapes the audience, too. "I'm Farming and I Grow It" had its largest following among those 45 to 65.

"The research shows that if it's good content, it doesn't have to have a young audience to go viral," Elliott said.

Good content may be subjective, but posted comments reveal a simple formula: make people happy.

"If a video makes you happy, you want to share it and make other people feel good, too," Elliott said.

Her research hints at what cat video viewers have long suspected: cute animals make for lots of views. Elliott said there's also room for further research to unify the use of the word "viral."

"Everybody has this idea that viral just means a lot of views," she said. "I would argue it has to hit a lot of different mediums and different groups of viewers and have longevity."

Elliott is a 2004 graduate of Salina High School South. She is the daughter of Michael and Kathy Elliott, Salina.

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Potential boost for world's food supply: Resistance gene found against Ug99 wheat stem rust pathogen

June 27, 2013 — The world's food supply got a little more plentiful thanks to a scientific breakthrough.

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Eduard Akhunov, associate professor of plant pathology at Kansas State University, and his colleague, Jorge Dubcovsky from the University of California-Davis, led a research project that identified a gene that gives wheat plants resistance to one of the most deadly races of the wheat stem rust pathogen -- called Ug99 -- that was first discovered in Uganda in 1999. The discovery may help scientists develop new wheat varieties and strategies that protect the world's food crops against the wheat stem rust pathogen that is spreading from Africa to the breadbaskets of Asia and can cause significant crop losses.

Other Kansas State University researchers include Harold Trick, professor of plant pathology; Andres Salcedo, doctoral candidate in genetics from Mexico; and Cyrille Saintenac, a postdoctoral research associate currently working at the Institut National de la Recherche Agronomique in France. The project was funded by the U.S. Department of Agriculture and Borlaug Global Rust Initiative.

The team's study, "Identification of Wheat Gene Sr35 that Confers Resistance to Ug99 Stem Rust Race Group," appears in the journal Science.

It identifies the stem rust resistance gene named Sr35, and appears alongside a study from an Australian group that identifies another effective resistance gene called Sr33.

"This gene, Sr35, functions as a key component of plants' immune system," Akhunov said. "It recognizes the invading pathogen and triggers a response in the plant to fight the disease."

Wheat stem rust is caused by a fungal pathogen. According to Akhunov, since the 1950s wheat breeders have been able to develop wheat varieties that are largely resistant to this pathogen. However, the emergence of strain Ug99 in Uganda in 1999 devastated crops and has spread to Kenya, Ethiopia, Sudan and Yemen, though has yet to reach the U.S.

"Until that point, wheat breeders had two or three genes that were so efficient against stem rust for decades that this disease wasn't the biggest concern," Akhunov said. "However, the discovery of the Ug99 race of pathogen showed that changes in the virulence of existing pathogen races can become a huge problem."

As a first line of defense, wheat breeders and researchers began looking for resistance genes among those that had already been discovered in the existing germplasm repositories, he said.

"The Sr35 gene was one of those genes that was discovered in einkorn wheat grown in Turkey," Akhunov said. "Until now, however, we did not know what kind of gene confers resistance to Ug99 in this wheat accession."

To identify the resistance gene Sr35, the team turned to einkorn wheat that is known to be resistant to the Ug99 fungal strain. Einkorn wheat has limited economic value and is cultivated in small areas of the Mediterranean region. It has been replaced by higher yielding pasta and bread wheat varieties.

Researchers spent nearly four years trying to identify the location of the Sr35 gene in the wheat genome, which contains nearly two times more genetic information than the human genome.

Once the researchers narrowed the list of candidate genes, they used two complimentary approaches to find the Sr35 gene. First, they chemically mutagenized the resistant accession of wheat to identify plants that become susceptible to the stem rust pathogen.

"It was a matter of knocking out each candidate gene until we found the one that made a plant susceptible," Akhunov said. "It was a tedious process and took a lot of time, but it was worth the effort."

Next, researchers isolated the candidate gene and used biotechnical approaches to develop transgenic plants that carried the Sr35 gene and showed resistance to the Ug99 race of stem rust.

Now that the resistance gene has been found, Akhunov and colleagues are looking at what proteins are transferred by the fungus into the wheat plants and recognized by the protein encoded by the Sr35 gene. This will help researchers to better understand the molecular mechanisms behind infection and develop new approaches for controlling this devastating pathogen.

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World's food supply got a little more plentiful: Resistance gene found against ug99 wheat stem rust pathogen

June 27, 2013 — The world's food supply got a little more plentiful thanks to a scientific breakthrough.

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The team's study, "Identification of Wheat Gene Sr35 that Confers Resistance to Ug99 Stem Rust Race Group," appears in the journal Science.

It identifies the stem rust resistance gene named Sr35, and appears alongside a study from an Australian group that identifies another effective resistance gene called Sr33.

"This gene, Sr35, functions as a key component of plants' immune system," Akhunov said. "It recognizes the invading pathogen and triggers a response in the plant to fight the disease."

As a first line of defense, wheat breeders and researchers began looking for resistance genes among those that had already been discovered in the existing germplasm repositories, he said.

Researchers spent nearly four years trying to identify the location of the Sr35 gene in the wheat genome, which contains nearly two times more genetic information than the human genome.

Next, researchers isolated the candidate gene and used biotechnical approaches to develop transgenic plants that carried the Sr35 gene and showed resistance to the Ug99 race of stem rust.

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Key step in protein synthesis revealed

"This is something that the whole field has been pursuing for the past decade," said Harry Noller, Sinsheimer Professor of Molecular Biology at UC Santa Cruz. "We've trapped the ribosome in the middle of its movement during translocation, which is the most interesting, profound, and complex thing the ribosome does."

Understanding ribosomes is important not only because of their crucial role as the protein factories of all living cells, but also because many antibiotics work by targeting bacterial ribosomes. Research on ribosomes by Noller and others has led to the development of novel antibiotics that hold promise for use against drug-resistant bacteria.

Noller's lab is known for its pioneering work to elucidate the atomic structure of the ribosome, which is made of long chains of RNA and proteins interlaced together in complicated foldings. Using x-ray crystallography, his group has shown the ribosome in different conformations as it interacts with other molecules. The new study, led by postdoctoral researcher Jie Zhou, is published in the June 28 issue of Science.

To make a new protein, the genetic instructions are first copied from the DNA sequence of a gene to a messenger RNA molecule. The ribosome then "reads" the sequence on the messenger RNA, matching each three-letter "codon" of genetic code with a specific protein building block, one of 20 amino acids. In this way, the ribosome builds a protein molecule with the exact sequence of amino acids specified by the gene. The matching of codons to amino acids is done via transfer RNA molecules, each of which carries a specific amino acid to the ribosome and lines it up with the matching codon on the messenger RNA.

"The big question has been to understand how messenger RNA and transfer RNA are moved synchronously through the ribosome as the messenger RNA is translated into protein," Noller said. "The transfer RNAs are large macromolecules, and the ribosome has moving parts that enable it to move them through quickly and accurately at a rate of 20 per second."

The key step, called translocation, occurs after the bond is formed joining a new amino acid to the growing protein chain. The transfer RNA then leaves that amino acid behind and moves to the next site on the ribosome, along with a synchronous movement of the messenger RNA to bring the next codon and its associated amino acid into position for bond formation. The new study shows the ribosome in the midst of a key step in this process.

"This gives us snapshots of the intermediate state in the movement," Noller said. "We can now see how the ribosome does this with a rotational movement of the small subunit, and we can see what look to be the 'pawls' of a ratcheting mechanism that prevents slippage of the translational reading frame."

Many antibiotics interfere with the function of the bacterial ribosome by preventing or retarding this translocational movement. Understanding the structural and dynamic details of this movement could help researchers design new antibiotics.

Translocation involves two steps (as Noller's lab showed back in 1989). Step one is the movement of the tRNA's "acceptor end" (where it carried the amino acid). This leads to a hybrid state, with the two ends of the tRNA in two different sites on the ribosome: the "anticodon end" is still lined up with the matching mRNA codon in one site, while the acceptor end has moved on to the next site. Step two is the movement of the tRNA's anticodon end together with the messenger RNA, which advances by one codon. Step two requires a catalyst called elongation factor G (EF-G). The new study shows the ribosome in the middle of step two, with EF-G bound to it and the tRNA halfway between the hybrid state and the final state.

Noller has spent decades working to understand how the ribosome works. Being able to see how it moves, he said, is an exciting moment.

"This is one of the most fundamental movements in all of biology, at the root of the whole mechanism for translation of the genetic code, and we now understand it all the way down to the molecular level," Noller said. "This mechanism had to be in place around the origin of life as we know it."

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Brain's 'garbage truck' may hold key to treating Alzheimer's and other disorders

June 27, 2013 — In a perspective piece appearing today in the journal Science, researchers at University of Rochester Medical Center (URMC) point to a newly discovered system by which the brain removes waste as a potentially powerful new tool to treat neurological disorders like Alzheimer's disease. In fact, scientists believe that some of these conditions may arise when the system is not doing its job properly.

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"Essentially all neurodegenerative diseases are associated with the accumulation of cellular waste products," said Maiken Nedergaard, M.D., D.M.Sc., co-director of the URMC Center for Translational Neuromedicine and author of the article. "Understanding and ultimately discovering how to modulate the brain's system for removing toxic waste could point to new ways to treat these diseases."

The body defends the brain like a fortress and rings it with a complex system of gateways that control which molecules can enter and exit. While this "blood-brain barrier" was first described in the late 1800s, scientists are only now just beginning to understand the dynamics of how these mechanisms function. In fact, the complex network of waste removal, which researchers have dubbed the glymphatic system, was only first disclosed by URMC scientists last August in the journal Science Translational Medicine.

The removal of waste is an essential biological function and the lymphatic system -- a circulatory network of organs and vessels -- performs this task in most of the body. However, the lymphatic system does not extend to the brain and, consequently, researchers have never fully understood what the brain does its own waste. Some scientists have even speculated that these byproducts of cellular function where somehow being "recycled" by the brain's cells.

One of the reasons why the glymphatic system had long eluded comprehension is that it cannot be detected in samples of brain tissue. The key to discovering and understanding the system was the advent of a new imaging technology called two-photon microscopy which enables scientists to peer deep within the living brain. Using this technology on mice, whose brains are remarkably similar to humans, Nedergaard and her colleagues were able to observe and document what amounts to an extensive, and heretofore unknown, plumbing system responsible for flushing waste from throughout the brain.

The brain is surrounded by a membrane called the arachnoid and bathed in cerebral spinal fluid (CSF). CSF flows into the interior of the brain through the same pathways as the arteries that carry blood. This parallel system is akin to a donut shaped pipe within a pipe, with the inner ring carrying blood and the outer ring carrying CSF. The CSF is draw into brain tissue via a system of conduits that are controlled by a type support cells in the brain known as glia, in this case astrocytes. The term glymphatic was coined by combining the words glia and lymphatic.

The CSF is flushed through the brain tissue at a high speed sweeping excess proteins and other waste along with it. The fluid and waste are exchanged with a similar system that parallels veins which carries the waste out of the brain and down the spine where it is eventually transferred to the lymphatic system and from there to the liver, where it is ultimately broken down.

While the discovery of the glymphatic system solved a mystery that had long baffled the scientific community, understanding how the brain removes waste -- both effectively and what happens when this system breaks down -- has significant implications for the treatment of neurological disorders.

One of the hallmarks of Alzheimer's disease is the accumulation in the brain of the protein beta amyloid. In fact, over time these proteins amass with such density that they can be observed as plaques on scans of the brain. Understanding what role the glymphatic system plays in the brain's inability to break down and remove beta amyloid could point the way to new treatments. Specifically, whether certainly key 'players' in the glymphatic system, such as astrocytes, can be manipulated to ramp up the removal of waste.

"The idea that 'dirty brain' diseases like Alzheimer may result from a slowing down of the glymphatic system as we age is a completely new way to think about neurological disorders," said Nedergaard. "It also presents us with a new set of targets to potentially increase the efficiency of glymphatic clearance and, ultimately, change the course of these conditions."

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Gas-giant exoplanets cling close to their parent stars

Finding extrasolar planets has become so commonplace that it seems astronomers merely have to look up and another world is discovered. However, results from Gemini Observatory's recently completed Planet-Finding Campaign -- the deepest, most extensive direct imaging survey to date -- show the vast outlying orbital space around many types of stars is largely devoid of gas-giant planets, which apparently tend to dwell close to their parent stars.

"It seems that gas-giant exoplanets are like clinging offspring," says Michael Liu of the University of Hawaii's Institute for Astronomy and leader of the Gemini Planet-Finding Campaign. "Most tend to shun orbital zones far from their parents. In our search, we could have found gas giants beyond orbital distances corresponding to Uranus and Neptune in our own Solar System, but we didn't find any." The Campaign was conducted at the Gemini South telescope in Chile, with funding support for the team from the National Science Foundation and NASA. The Campaign's results, Liu says, will help scientists better understand how gas-giant planets form, as the orbital distances of planets are a key signature that astronomers use to test exoplanet formation theories.

Eric Nielsen of the University of Hawaii, who leads a new paper about the Campaign's search for planets around stars more massive than the Sun, adds that the findings have implications beyond the specific stars imaged by the team. "The two largest planets in our Solar System, Jupiter and Saturn, are huddled close to our Sun, within 10 times the distance between the Earth and Sun," he points out. "We found that this lack of gas-giant planets in more distant orbits is typical for nearby stars over a wide range of masses."

Two additional papers from the Campaign will be published soon and reveal similar tendencies around other classes of stars. However, not all gas-giant exoplanets snuggle so close to home. In 2008, astronomers using the Gemini North telescope and W.M. Keck Observatory on Hawaii's Mauna Kea took the first-ever direct images of a family of planets around the star HR 8799, finding gas-giant planets at large orbital separations (about 25-70 times the Earth-Sun distance). This discovery came after examining only a few stars, suggesting such large-separation gas giants could be common. The latest Gemini results, from a much more extensive imaging search, show that gas-giant planets at such distances are in fact uncommon.

Liu sums up the situation this way: "We've known for nearly 20 years that gas-giant planets exist around other stars, at least orbiting close-in. Thanks to leaps in direct imaging methods, we can now learn how far away planets can typically reside. The answer is that they usually avoid significant areas of real estate around their host stars. The early findings, like HR 8799, probably skewed our perceptions."

The team's second new paper explores systems where dust disks around young stars show holes, which astronomers have long suspected are cleared by the gravitational force of orbiting planets. "It makes sense that where you see debris cleared away that a planet would be responsible, but we did not know what types of planets might be causing this. It appears that instead of massive planets, smaller planets that we can't detect directly could be responsible," said Zahed Wahhaj of the European Southern Observatory and lead author on the survey's paper on dusty disk stars. Finally, the third new paper from the team looks at the very youngest stars close to Earth. "A younger system should have brighter, easier to detect planets," according to the lead author Beth Biller of the Max Planck Institute for Astronomy.

"Around other stars, NASA's Kepler telescope has shown that planets larger than the Earth and within the orbit of Mercury are plentiful," explains Biller. "The NICI Campaign demonstrates that gas-giant planets beyond the distance of the orbit of Neptune are rare." The soon-to-be-delivered Gemini Planet Imager will begin to bridge this gap likely revealing, for the first time, how common giant planets are in orbits similar to the gas-giant planets of our own Solar System.

The observations for the Campaign were obtained with the Gemini instrument known as NICI, the Near-Infrared Coronagraphic Imager, which was the first instrument for an 8-10 meter-class telescope designed specifically for finding faint companions around bright stars. NICI was built by Doug Toomey (Mauna Kea Infrared), Christ Ftaclas, and Mark Chun (University of Hawai'i), with funding from NASA.

The first two papers from the Campaign have been accepted for publication in The Astrophysical Journal (Nielsen et al. and Wahhaj et al.), and the third paper (Biller et al.) will be published later this summer.

The NICI Campaign team is composed of PI Michael Liu, co-PI Mark Chun (University of Hawaii), co-PI Laird Close (University of Arizona), Doug Toomey (Mauna Kea Infrared), Christ Ftaclas (University of Hawaii), Zahed Wahhaj (European Southern Observatory), Beth Biller (Max Planck Institute for Astronomy), Eric Nielsen (University of Hawaii), Evgenya Shkolnik (DTM, Carnegie Institution of Washington), Adam Burrows (Princeton University), Neill Reid (Space Telescope Science Institute), Niranjan Thatte, Matthias Tecza, Fraser Clarke (University of Oxford), Jane Gregorio Hetem, Elisabete De Gouveia Dal Pino (University of Sao Paolo), Silvia Alencar (University of Minas Gerais), Pawel Artymowicz (University of Toronto), Doug Lin (University of California Santa Cruz), Shigeru Ida (Tokyo Institute of Technology), Alan Boss (DTM, Carnegie Institution of Washington), and Mark Kuchner (NASA Goddard), Tom Hayward and Markus Hartung (Gemini Observatory), Jared Males, and Andy Skemer (University of Arizona).

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Breakthrough in Internet bandwidth: New fiber optic technology could ease Internet congestion, video streaming

Described in the June 28 issue of the journal Science, the technology centers on donut-shaped laser light beams called optical vortices, in which the light twists like a tornado as it moves along the beam path, rather than in a straight line.

Widely studied in molecular biology, atomic physics and quantum optics, optical vortices (also known as orbital angular momentum, or OAM, beams) were thought to be unstable in fiber, until BU Engineering Professor Siddharth Ramachandran recently designed an optical fiber that can propagate them. In the paper, he and Alan Willner of USC demonstrate not only the stability of the beams in optical fiber but also their potential to boost Internet bandwidth.

"For several decades since optical fibers were deployed, the conventional assumption has been that OAM-carrying beams are inherently unstable in fibers," said Ramachandran. "Our discovery, of design classes in which they are stable, has profound implications for a variety of scientific and technological fields that have exploited the unique properties of OAM-carrying light, including the use of such beams for enhancing data capacity in fibers."

The reported research represents a close collaboration between optical fiber experts at BU and optical communication systems experts at USC. "Siddharth's fiber represents a very unique and valuable innovation. It was great to work together to demonstrate a terabit-per-second capacity transmission link," said Willner, electrical engineering professor at the USC Viterbi School of Engineering.

Ramachandran and Willner collaborated with OFS-Fitel, a fiber optics company in Denmark, and Tel Aviv University.

Funded by the Defense Advanced Research Projects Agency, the technology could not come at a better time, as one of the main strategies to boost Internet bandwidth is running into roadblocks just as mobile devices fuel rapidly growing demands on the Internet. Traditionally, bandwidth has been enhanced by increasing the number of colors, or wavelengths of data-carrying laser signals -- essentially streams of 1s and 0s -- sent down an optical fiber, where the signals are processed according to color. Increasing the number of colors has worked well since the 1990s when the method was introduced, but now that number is reaching physical limits.

An emerging strategy to boost bandwidth is to send the light through a fiber along distinctive paths, or modes, each carrying a cache of data from one end of the fiber to the other. Unlike the colors, however, data streams of 1s and 0s from different modes mix together; determining which data stream came from which source requires computationally intensive and energy-hungry digital signal processing algorithms.

Ramachandran's and Willner's approach combines both strategies, packing several colors into each mode, and using multiple modes. Unlike in conventional fibers, OAM modes in these specially designed fibers can carry data streams across an optical fiber while remaining separate at the receiving end. In experiments appearing in the Science paper, Ramachandran created an OAM fiber with four modes (an optical fiber typically has two), and he and Willner showed that for each OAM mode, they could send data through a one-kilometer fiber in 10 different colors, resulting in a transmission capacity of 1.6 terabits per second, the equivalent of transmitting eight Blu-RayTM DVDs every second.

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Prevailing view of how the brain is wired overturned?

June 27, 2013 — A series of studies conducted by Randy Bruno, PhD, and Christine Constantinople, PhD, of Columbia University's Department of Neuroscience, topples convention by showing that sensory information travels to two places at once: not only to the brain's mid-layer (where most axons lead), but also directly to its deeper layers. The study appears in the June 28, 2013, edition of the journal Science.

For decades, scientists have thought that sensory information is relayed from the skin, eyes, and ears to the thalamus and then processed in the six-layered cerebral cortex in serial fashion: first in the middle layer (layer 4), then in the upper layers (2 and 3), and finally in the deeper layers (5 and 6.) This model of signals moving through a layered "column" was largely based on anatomy, following the direction of axons -- the wires of the nervous system.

"Our findings challenge dogma," said Dr. Bruno, assistant professor of neuroscience and a faculty member at Columbia's new Mortimer B. Zuckerman Mind Brain Behavior Institute and the Kavli Institute for Brain Science. "They open up a different way of thinking about how the cerebral cortex does what it does, which includes not only processing sight, sound, and touch but higher functions such as speech, decision-making, and abstract thought."

The researchers used the well-understood sensory system of rat whiskers, which operate much like human fingers, providing tactile information about shape and texture. The system is ideal for studying the flow of sensory signals, said Dr. Bruno, because past research has mapped each whisker to a specific barrel-shaped cluster of neurons in the brain. "The wiring of these circuits is similar to those that process senses in other mammals, including humans," said Dr. Bruno.

The study relied on a sensitive technique that allows researchers to monitor how signals move across synapses from one neuron to the next in a live animal. Using a glass micropipette with a tip only 1 micron wide (one-thousandth of a millimeter) filled with fluid that conducts nerve signals, the researchers recorded nerve impulses resulting from whisker stimulation in 176 neurons in the cortex and 76 neurons in the thalamus. The recordings showed that signals are relayed from the thalamus to layers 4 and 5 at the same time. Although 80 percent of the thalamic axons went to layer 4, there was surprisingly robust signaling to the deeper layer.

To confirm that the deeper layer receives sensory information directly, the researchers used the local anesthetic lidocaine to block all signals from layer 4. Activity in the deeper layer remained unchanged.

"This was very surprising," said Dr. Constantinople, currently a postdoctoral researcher at Princeton University's Neuroscience Institute. "We expected activity in the lower layers to be turned off or very much diminished when we blocked layer 4. This raises a whole new set of questions about what the layers actually do."

The study suggests that upper and lower layers of the cerebral cortex form separate circuits and play separate roles in processing sensory information. Researchers think that the deeper layers are evolutionarily older -- they are found in reptiles, for example, while the upper and middle layers, appear in more evolved species and are thickest in humans.

One possibility, suggests Dr. Bruno, is that basic sensory processing is done in the lower layers: for example, visually tracking a tennis ball to coordinate the movement needed to make contact. Processing that involves integrating context or experience or that involves learning might be done in the upper layers. For example, watching where an opponent is hitting the ball and planning where to place the return shot.

"At this point, we still don't know what, behaviorally, the different layers do," said Dr. Bruno, whose lab is now focused on finding those answers.

Nobel-prize-winning neurobiologist Bert Sakmann, MD, PhD, of the Max Planck Institute in Germany, describes the study as "very convincing" and a game-changer. "For decades, the field has assumed, based largely on anatomy, that the work of the cortex begins in layer 4. Dr. Bruno has produced a technical masterpiece that firmly establishes two separate input streams to the cortex," said Dr. Sakmann. "The prevailing view that the cortex is a collection of monolithic columns, handing off information to progressively higher modules, is an idea that will have to go."

"Bruno's work goes a long way toward overturning the conventional wisdom and provides new insight into the functional segregation of sensory input to the mammalian cerebral cortex, the region of the brain that processes our thoughts, decisions, and actions," said Thomas Jessell, PhD, Claire Tow Professor of Motor Neuron Disorders in Neuroscience and a co-director of the Mortimer B. Zuckerman Mind Brain Behavior Institute and the Kavli Institute for Brain Science. "Developing a more refined understanding of cortical processing will take the combined efforts of anatomists, cell and molecular biologists, and animal behaviorists. The Zuckerman Institute, with its multidisciplinary faculty and broad mission, is ideally suited to building on Bruno's fascinating work."

Funding for the study was provided by the National Institute of Neurological Disorders and Stroke (Grant # NS069679), the Rita Allen Foundation, and the Klingenstein Fund.

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Imagination can change what we hear and see

June 27, 2013 — A study from Karolinska Institutet in Sweden shows, that our imagination may affect how we experience the world more than we perhaps think. What we imagine hearing or seeing "in our head" can change our actual perception. The study, which is published in the scientific journal Current Biology, sheds new light on a classic question in psychology and neuroscience -- about how our brains combine information from the different senses.

"We often think about the things we imagine and the things we perceive as being clearly dissociable," says Christopher Berger, doctoral student at the Department of Neuroscience and lead author of the study. "However, what this study shows is that our imagination of a sound or a shape changes how we perceive the world around us in the same way actually hearing that sound or seeing that shape does. Specifically, we found that what we imagine hearing can change what we actually see, and what we imagine seeing can change what we actually hear."

The study consists of a series of experiments that make use of illusions in which sensory information from one sense changes or distorts one's perception of another sense. Ninety-six healthy volunteers participated in total.

In the first experiment, participants experienced the illusion that two passing objects collided rather than passed by one-another when they imagined a sound at the moment the two objects met. In a second experiment, the participants' spatial perception of a sound was biased towards a location where they imagined seeing the brief appearance of a white circle. In the third experiment, the participants' perception of what a person was saying was changed by their imagination of a particular sound.

According to the scientists, the results of the current study may be useful in understanding the mechanisms by which the brain fails to distinguish between thought and reality in certain psychiatric disorders such as schizophrenia. Another area of use could be research on brain computer interfaces, where paralyzed individuals' imagination is used to control virtual and artificial devices.

"This is the first set of experiments to definitively establish that the sensory signals generated by one's imagination are strong enough to change one's real-world perception of a different sensory modality" says Professor Henrik Ehrsson, the principle investigator behind the study.

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